Table of Contents
-----------------

.. toctree::
   :maxdepth: 2

   code-of-conduct

   index

   jetstream/boot
   jetstream/login
   jetstream/ssh_changepassword
   quality-trimming
   
   assembly-trinity
   evaluation
   
   dammit_annotation
   quantification
   
   DE
   
   introduction-to-automation


   github
   LC-github

   jupyter-notebook-demo/Jupyter-Notebook-Notes
   database_resources
   filezila-file-transfer
   
   variant-calling

   analyzing_nanopore_data
   kmers-and-sourmash
   rmarkdown_rnaseq
   counting
   command-line-and-rstudio
   
   for-instructors/index